bioflow package¶
Subpackages¶
- bioflow.algorithms_bank package
- Submodules
- bioflow.algorithms_bank.clustering_routines module
- bioflow.algorithms_bank.conduction_routines module
- bioflow.algorithms_bank.flow_calculation_methods module
- bioflow.algorithms_bank.flow_significance_evaluation module
- bioflow.algorithms_bank.sampling_policies module
- bioflow.algorithms_bank.weigting_policies module
- Module contents
- bioflow.annotation_network package
- bioflow.bio_db_parsers package
- Submodules
- bioflow.bio_db_parsers.ComplexPortalParser module
- bioflow.bio_db_parsers.PhosphositeParser module
- bioflow.bio_db_parsers.geneOntologyParser module
- bioflow.bio_db_parsers.proteinRelParsers module
- bioflow.bio_db_parsers.reactomeParser module
- bioflow.bio_db_parsers.tfParsers module
- bioflow.bio_db_parsers.uniprotParser module
- Module contents
- bioflow.db_importers package
- Submodules
- bioflow.db_importers.biogrid_importer module
- bioflow.db_importers.complex_importer module
- bioflow.db_importers.go_and_uniprot_importer module
- bioflow.db_importers.hint_importer module
- bioflow.db_importers.import_main module
- bioflow.db_importers.phosphosite_importer module
- bioflow.db_importers.reactome_importer module
- bioflow.db_importers.tf_importers module
- Module contents
- bioflow.molecular_network package
- bioflow.neo4j_db package
- bioflow.pre_processing package
- bioflow.utils package
- Subpackages
- bioflow.utils.general_utils package
- Submodules
- bioflow.utils.general_utils.debug_scripts module
- bioflow.utils.general_utils.deprecated_id_translations module
- bioflow.utils.general_utils.dict_like_configs_parser module
- bioflow.utils.general_utils.high_level_os_io module
- bioflow.utils.general_utils.id_translations module
- bioflow.utils.general_utils.internet_io module
- bioflow.utils.general_utils.useful_wrappers module
- Module contents
- bioflow.utils.general_utils package
- Submodules
- bioflow.utils.dataviz module
- bioflow.utils.gdfExportInterface module
- bioflow.utils.io_routines module
- bioflow.utils.linalg_routines module
- bioflow.utils.log_behavior module
- bioflow.utils.random_path_statistics module
- bioflow.utils.remap_IDs module
- bioflow.utils.smtp_log_behavior module
- bioflow.utils.source_dbs_download module
- bioflow.utils.top_level module
- bioflow.utils.usage_ex-average_path_length module
- Module contents
- Subpackages
Submodules¶
bioflow.analysis_pipeline_example module¶
bioflow.cli module¶
This modules manages the command line interface